1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro1313_g261950.1

Sro1313_g261950.1 (Contig4199.g31963)


Aliases : Contig4199.g31963

Description : RNA-associated protein 21 homolog


Gene families : OG_01_0002791 (OrthoFinder) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1313_g261950.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.51 tig00021348_g20554.t1 No description available 0.07 OrthoFinder
Cre10.g466250 30790775 No description available 0.26 OrthoFinder
Cz08g20100.t1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.21 OrthoFinder
Dusal.0063s00009.1 33196767 WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.04 OrthoFinder
EOD22329 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.13 OrthoFinder
OT_17G00290.1 No alias Small-subunit processome, Utp21; WD40 repeat;... 0.05 OrthoFinder
PTI_01G00980.1 No alias Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.3 OrthoFinder
SymbC1.scaffold2511.4 2511.4 WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.01 OrthoFinder
TP02G03700.1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.17 OrthoFinder
Transcript_contig_5700 5700 Hypothetical protein 0.06 OrthoFinder
Vocar.0029s0128.1 32887338 WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.09 OrthoFinder
XM_002508565.1 MICPUN_98006, 98006 Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06094.1_571 HaLaN_00667, GFH06094 Small-subunit processome, Utp21 [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000306.1_cds_GFH10323.1_4800 HaLaN_05614, GFH10323 U3 small nucleolar RNA-associated 21-like protein 0.01 OrthoFinder
lcl|BLLF01001420.1_cds_GFH19190.1_13667 HaLaN_16097, GFH19190 U3 small nucleolar RNA-associated 21-like protein 0.08 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58237.1_8075 PRW58237 U3 small nucleolar RNA-associated 21-like protein 0.2 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492447.1_9140 KAA8492447 WD repeat-containing protein 36 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 1018 1332
IPR001680 WD40_repeat 885 918
No external refs found!