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  5. Sro1277_g258690.1

Sro1277_g258690.1 (Contig3253.g25674)


Aliases : Contig3253.g25674

Description : Ankyrin repeat


Gene families : OG_01_0000494 (OrthoFinder) Phylogenetic Tree(s): OG0000494_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1277_g258690.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre10.g445150 30790059 No description available 0.03 OrthoFinder
XM_002506542.1 MICPUN_64549, 64549 YbaK/aminoacyl-tRNA synthetase-associated domain; 3'-5'... 0.03 OrthoFinder
XM_003055388.1 MicpuC2_50053, 50053 3'-5' exonuclease domain [Interproscan]. 0.01 OrthoFinder
XM_003062561.1 MicpuC2_52161, 52161 3'-5' exonuclease domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001105.1_cds_GFH17154.1_11631 HaLaN_13720, GFH17154 3'-5' exonuclease domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002562 3'-5'_exonuclease_dom 674 851
IPR020683 Ankyrin_rpt-contain_dom 378 471
No external refs found!