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  5. Sro1246_g255770.1

Sro1246_g255770.1 (Contig800.g8974)


Aliases : Contig800.g8974

Description : SNF2 family helicase


Gene families : OG_01_0002593 (OrthoFinder) Phylogenetic Tree(s): OG0002593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1246_g255770.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
EOD10393 No alias C-5 cytosine methyltransferase [Interproscan]. 0.07 OrthoFinder
EOD26311 No alias C-5 cytosine methyltransferase; SNF2-related, N-terminal... 0.08 OrthoFinder
OT_04G05480.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
PTI_06G00580.1 No alias C-5 cytosine methyltransferase; SNF2-related, N-terminal... 0.12 OrthoFinder
SymbC1.scaffold206.23 206.23 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3419.6 3419.6 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
TP03G00950.1 No alias SNF2-related, N-terminal domain; C-5 cytosine... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 1582 1881
IPR001525 C5_MeTfrase 399 505
No external refs found!