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  5. Sro1234_g254930.1

Sro1234_g254930.1 (Contig2459.g20128)


Aliases : Contig2459.g20128

Description : Probable microcin-H47 secretion/processing ATP-binding protein MchF


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1234_g254930.1
Cluster HCCA: Cluster_394

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000741.4 tig00000741_g3824.t1 ABC transporter B family member 21 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021127.70 tig00021127_g18747.t1 ABC transporter B family member 25 OS=Oryza sativa... 0.01 OrthoFinder
Cre17.g725150 30782210 ABC transporter B family member 7 OS=Arabidopsis thaliana 0.03 OrthoFinder
Dusal.0407s00010.1 33197898 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
TP03G09080.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Transcript_contig_54411 54411 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
XM_002505595.1 MICPUN_87670, 87670 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|BLLF01000498.1_cds_GFH12386.1_6863 HaLaN_08063, GFH12386 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002502.1_cds_GFH24318.1_18795 HaLaN_22091, GFH24318 ATP-binding cassette transporter 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 144 406
IPR003439 ABC_transporter-like_ATP-bd 481 639
No external refs found!