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Aliases : Contig2714.g21837
Description : ECF subfamily RNA polymerase sigma-24 subunit
Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro118_g057670.1 | |
| Cluster | HCCA: Cluster_192 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro212_g088130.1 | Contig3756.g28796 | Signal recognition particle-docking protein FtsY | 0.08 | OrthoFinder | |
| Sro2289_g322140.1 | Contig3942.g30223 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro2344_g324151.1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
| Sro2355_g324540.1 | No alias | (Lipo)protein | 0.04 | OrthoFinder | |
| Sro260_g101600.1 | Contig1663.g15012 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro314_g115060.1 | Contig2448.g20032 | Thaumatin-like protein | 0.05 | OrthoFinder | |
| Sro379_g130430.1 | Contig3398.g26560 | Cathepsin | 0.03 | OrthoFinder | |
| Sro431_g141380.1 | Contig2042.g17541 | Laminin G sub domain 2 | 0.02 | OrthoFinder | |
| Sro46_g027260.1 | Contig1636.g14716 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro8_g006550.1 | Contig89.g968 | Laminin G sub domain 2 | 0.03 | OrthoFinder | |
| Sro8_g006570.1 | Contig89.g970 | Membrane | 0.04 | OrthoFinder | |
| Sro8_g006650.1 | Contig89.g978 | Mucin 5B, oligomeric mucus gel-forming | 0.03 | OrthoFinder | |
| Sro8_g006650.2 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| Sro8_g006650.3 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro8_g006670.1 | Contig89.g980 | ECF subfamily RNA polymerase sigma-24 subunit | 0.03 | OrthoFinder | |
| Sro8_g006770.1 | Contig89.g990 | Intercellular signal essential for a variety of... | 0.03 | OrthoFinder | |
| Sro8_g006820.1 | Contig89.g995 | ECF subfamily RNA polymerase sigma-24 subunit | 0.08 | OrthoFinder | |
| Sro8_g006830.1 | Contig89.g996 | Hemolysin-type calcium-binding repeat (2 copies) | 0.09 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Enrichment |
| MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| MF | GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| MF | GO:0004383 | guanylate cyclase activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0006182 | cGMP biosynthetic process | IEP | Enrichment |
| BP | GO:0006298 | mismatch repair | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Enrichment |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0007165 | signal transduction | IEP | Enrichment |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009187 | cyclic nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009190 | cyclic nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Enrichment |
| MF | GO:0009975 | cyclase activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| MF | GO:0016829 | lyase activity | IEP | Enrichment |
| MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Enrichment |
| MF | GO:0020037 | heme binding | IEP | Enrichment |
| MF | GO:0030983 | mismatched DNA binding | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0046068 | cGMP metabolic process | IEP | Enrichment |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0052652 | cyclic purine nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Enrichment |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |