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  5. Sro1180_g249780.2

Sro1180_g249780.2


Description : Leucine-rich repeat [Interproscan].


Gene families : OG_01_0003643 (OrthoFinder) Phylogenetic Tree(s): OG0003643_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1180_g249780.2
Cluster HCCA: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
Sro76_g041580.1 Contig184.g2136 Leucine Rich Repeat 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Enrichment
MF GO:0004888 transmembrane signaling receptor activity IEP Enrichment
MF GO:0004930 G protein-coupled receptor activity IEP Enrichment
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 343 401
IPR001611 Leu-rich_rpt 650 709
No external refs found!