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Aliases : Contig2228.g18470
Description : ECF subfamily RNA polymerase sigma-24 subunit
Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro116_g056940.1 | |
| Cluster | HCCA: Cluster_175 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro144_g067110.1 | Contig3873.g29810 | ECF subfamily RNA polymerase sigma-24 subunit | 0.04 | OrthoFinder | |
| Sro1913_g305010.1 | Contig2551.g20751 | Domain protein | 0.05 | OrthoFinder | |
| Sro2221_g319641.1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
| Sro2289_g322140.1 | Contig3942.g30223 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro2475_g328730.1 | Contig3897.g29875 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro2757_g336340.1 | Contig1015.g10160 | Pentaxin family | 0.05 | OrthoFinder | |
| Sro314_g115060.1 | Contig2448.g20032 | Thaumatin-like protein | 0.03 | OrthoFinder | |
| Sro314_g115170.1 | Contig2448.g20043 | Hypothetical protein | 0.05 | OrthoFinder | |
| Sro379_g130440.1 | Contig3398.g26561 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro431_g141380.1 | Contig2042.g17541 | Laminin G sub domain 2 | 0.02 | OrthoFinder | |
| Sro437_g142840.1 | Contig994.g10050 | Hypothetical protein | 0.06 | OrthoFinder | |
| Sro46_g027260.1 | Contig1636.g14716 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro57_g033500.1 | Contig284.g3718 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro8_g006620.1 | Contig89.g975 | Intercellular signal essential for a variety of... | 0.03 | OrthoFinder | |
| Sro8_g006650.1 | Contig89.g978 | Mucin 5B, oligomeric mucus gel-forming | 0.03 | OrthoFinder | |
| Sro8_g006730.1 | Contig89.g986 | ECF subfamily RNA polymerase sigma-24 subunit | 0.04 | OrthoFinder | |
| Sro950_g223790.1 | Contig3704.g28513 | Mycoplasma protein of unknown function, DUF285 | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| MF | GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Enrichment |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0007165 | signal transduction | IEP | Enrichment |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009187 | cyclic nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009190 | cyclic nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010035 | response to inorganic substance | IEP | Enrichment |
| BP | GO:0010038 | response to metal ion | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Enrichment |
| MF | GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity | IEP | Enrichment |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
| BP | GO:0019748 | secondary metabolic process | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
| BP | GO:0042221 | response to chemical | IEP | Enrichment |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0046937 | phytochelatin metabolic process | IEP | Enrichment |
| BP | GO:0046938 | phytochelatin biosynthetic process | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |