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  5. Sro10_g008190.1

Sro10_g008190.1 (Contig1.g43)


Aliases : Contig1.g43

Description : ECF subfamily RNA polymerase sigma-24 subunit


Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro10_g008190.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Sro144_g067110.1 Contig3873.g29810 ECF subfamily RNA polymerase sigma-24 subunit 0.01 OrthoFinder
Sro1513_g278830.1 Contig507.g6747 ECF subfamily RNA polymerase sigma-24 subunit 0.04 OrthoFinder
Sro1913_g305010.1 Contig2551.g20751 Domain protein 0.06 OrthoFinder
Sro2344_g324151.1 No alias Hypothetical protein 0.04 OrthoFinder
Sro2355_g324540.1 No alias (Lipo)protein 0.02 OrthoFinder
Sro314_g115060.1 Contig2448.g20032 Thaumatin-like protein 0.04 OrthoFinder
Sro379_g130430.1 Contig3398.g26560 Cathepsin 0.03 OrthoFinder
Sro431_g141380.1 Contig2042.g17541 Laminin G sub domain 2 0.04 OrthoFinder
Sro8_g006620.1 Contig89.g975 Intercellular signal essential for a variety of... 0.03 OrthoFinder
Sro8_g006650.2 No alias Hypothetical protein 0.03 OrthoFinder
Sro8_g006730.1 Contig89.g986 ECF subfamily RNA polymerase sigma-24 subunit 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!