Sro1039_g234350.1 (Contig313.g4164)

Aliases : Contig313.g4164

Description : Putative E3 ubiquitin-protein ligase LIN

Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Sro1039_g234350.1
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
EOD33863 No alias U box domain [Interproscan]. 0.03 OrthoFinder
Sro13_g009770.1 Contig337.g4518 Domain containing protein 0.04 OrthoFinder
Sro1511_g278700.1 Contig2369.g19497 E3 ubiquitin-protein ligase 0.03 OrthoFinder
XM_002502612.1 MICPUN_58878, 58878 U box domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000032.1_cds_GFH06298.1_775 HaLaN_00905, GFH06298 U-box domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 115 185
No external refs found!