Sro102_g052200.1 (Contig319.g4264)

Aliases : Contig319.g4264

Description : Pseudouridine synthase C

Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro102_g052200.1
Cluster	HCCA: Cluster_269

Target	Alias	Description	ECC score	Gene Family Method
OT_17G00440.1	No alias	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.03	OrthoFinder
TP11G00520.1	No alias	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
Vocar.0005s0071.1	32884023	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.01	OrthoFinder
Vocar.0005s0224.1	32883863	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.01	OrthoFinder
XM_003057907.1	MicpuC2_70854, 70854	RNA pseudouridylate synthase	0.01	OrthoFinder
XM_003064098.1	MicpuC2_36806, 36806	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Enrichment
MF	GO:0005096	GTPase activator activity	IEP	Enrichment
MF	GO:0008047	enzyme activator activity	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
MF	GO:0030234	enzyme regulator activity	IEP	Enrichment
MF	GO:0030695	GTPase regulator activity	IEP	Enrichment
BP	GO:0043631	RNA polyadenylation	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
MF	GO:0098772	molecular function regulator	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	294	458

External Links

No external refs found!