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  5. lcl|VRMN01000014.1_cds_KAA8491410.1_2411

lcl|VRMN01000014.1_cds_KAA8491410.1_2411 (KAA8491410)


Aliases : KAA8491410

Description : TATA-box-binding protein


Gene families : OG_01_0002801 (OrthoFinder) Phylogenetic Tree(s): OG0002801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000014.1_cds_KAA8491410.1_2411
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Sro47_g027700.1 Contig1172.g11163 Box-binding protein-like protein 2 0.02 OrthoFinder
Transcript_contig_58258 58258 TATA-box binding protein [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0034998 oligosaccharyltransferase I complex IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR000814 TBP 126 207
IPR000814 TBP 36 116
No external refs found!