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  5. lcl|VRMN01000014.1_cds_KAA8491354.1_2355

lcl|VRMN01000014.1_cds_KAA8491354.1_2355 (KAA8491354)


Aliases : KAA8491354

Description : DEAD-box ATP-dependent RNA helicase 39


Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000014.1_cds_KAA8491354.1_2355
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre01.g033832 30788674 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.03 OrthoFinder
Cre10.g436650 30789761 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.05 OrthoFinder
Dusal.0045s00001.1 33191641 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0225s00011.1 33185188 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_05G03300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_10G03270.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
PTI_20G02340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Sro1441_g272930.1 Contig2512.g20550 Dependent RNA helicase 0.02 OrthoFinder
Sro730_g194000.1 Contig80.g832 Dependent RNA helicase 0.02 OrthoFinder
TP04G05770.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Vocar.0001s0986.1 32885925 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002503395.1 MICPUN_59763, 59763 Helicase, C-terminal; K Homology domain, type 1;... 0.07 OrthoFinder
lcl|BLLF01005079.1_cds_GFH30702.1_25179 HaLaN_29601, GFH30702 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18294.1_5877 PRW18294 DEAD-box ATP-dependent RNA helicase 50 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 119 333
IPR001650 Helicase_C 370 482
No external refs found!