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  5. lcl|VRMN01000011.1_cds_KAA8491930.1_4938

lcl|VRMN01000011.1_cds_KAA8491930.1_4938 (KAA8491930)


Aliases : KAA8491930

Description : Putative tRNA pseudouridine synthase 1


Gene families : OG_01_0000746 (OrthoFinder) Phylogenetic Tree(s): OG0000746_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491930.1_4938
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cz09g04080.t1 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006476 protein deacetylation IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016575 histone deacetylation IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0035601 protein deacylation IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098732 macromolecule deacylation IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 71 217
No external refs found!