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  5. lcl|VRMN01000005.1_cds_KAA8494163.1_4027

lcl|VRMN01000005.1_cds_KAA8494163.1_4027 (KAA8494163)


Aliases : KAA8494163

Description : ABC transporter D family member 2


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8494163.1_4027
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Dusal.0021s00035.1 33197774 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
OT_11G01140.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
SymbC1.scaffold130.10 130.10 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Transcript_contig_57585 57585 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0006906 vesicle fusion IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016050 vesicle organization IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Enrichment
BP GO:0048284 organelle fusion IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0061025 membrane fusion IEP Enrichment
BP GO:0090174 organelle membrane fusion IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 125 396
IPR003439 ABC_transporter-like_ATP-bd 509 657
No external refs found!