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  5. lcl|VRMN01000005.1_cds_KAA8494124.1_3988

lcl|VRMN01000005.1_cds_KAA8494124.1_3988 (KAA8494124)


Aliases : KAA8494124

Description : E3 ubiquitin-protein ligase ATL9


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8494124.1_3988
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
EOD13723 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
OT_10G02410.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
OT_17G00530.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro194_g082920.1 Contig237.g2887 Protein ligase RNF181 0.01 OrthoFinder
Sro2009_g310720.1 Contig340.g4632 Protein ligase Arkadia 0.02 OrthoFinder
Sro66_g037140.1 Contig399.g5384 Protein ligase RNF12 0.01 OrthoFinder
SymbC1.scaffold449.5 449.5 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
TP02G01130.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
TP05G03820.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
XM_002503238.1 MICPUN_101076, 101076 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031965 nuclear membrane IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0055088 lipid homeostasis IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 534 576
No external refs found!