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  5. lcl|VRMN01000003.1_cds_KAA8495911.1_1909

lcl|VRMN01000003.1_cds_KAA8495911.1_1909 (KAA8495911)


Aliases : KAA8495911

Description : Replication factor C subunit 1


Gene families : OG_01_0002804 (OrthoFinder) Phylogenetic Tree(s): OG0002804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495911.1_1909
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021017.29 tig00021017_g17203.t1 Cell cycle.interphase.DNA... 0.02 OrthoFinder
Dusal.0540s00007.1 33202830 Hypothetical protein 0.01 OrthoFinder
EOD33929 No alias Putative clamp loader replication factor C subunit 1 [Ensembl]. 0.02 OrthoFinder
PTI_03G02980.1 No alias DNA replication factor RFC1, C-terminal; ATPase,... 0.02 OrthoFinder
Sro827_g207800.1 Contig2896.g23085 Factor C subunit 1 0.06 OrthoFinder
Vocar.0037s0105.1 32897478 ATPase, AAA-type, core; BRCT domain; DNA replication... 0.01 OrthoFinder
XM_002502778.1 MICPUN_59230, 59230 BRCT domain; ATPase, AAA-type, core; DNA replication... 0.03 OrthoFinder
XM_003060896.1 MicpuC2_60700, 60700 DNA replication factor RFC1, C-terminal; ATPase,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005663 DNA replication factor C complex IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 358 462
IPR013725 DNA_replication_fac_RFC1_C 616 766
IPR001357 BRCT_dom 179 255
No external refs found!