lcl|VRMN01000002.1_cds_KAA8496562.1_291 (KAA8496562)


Aliases : KAA8496562

Description : Eukaryotic translation initiation factor 4E-1


Gene families : OG_01_0001366 (OrthoFinder) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496562.1_291
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.152 tig00000076_g2443.t1 Eukaryotic translation initiation factor NCBP... 0.03 OrthoFinder
Cpa|evm.model.tig00000241.158 tig00000241_g21024.t1 Eukaryotic translation initiation factor NCBP OS=Oryza... 0.07 OrthoFinder
Cre03.g199900 30786876, EIF4E Eukaryotic translation initiation factor 4E-1... 0.05 OrthoFinder
Cz01g00030.t1 No alias Translation Initiation factor eIF- 4e [Interproscan]. 0.03 OrthoFinder
Dusal.0157s00015.1 33200054 Translation Initiation factor eIF- 4e [Interproscan]. 0.07 OrthoFinder
EOD09372 No alias Translation Initiation factor eIF- 4e [Interproscan]. 0.01 OrthoFinder
OT_02G01990.1 No alias Translation Initiation factor eIF- 4e [Interproscan]. 0.02 OrthoFinder
PTI_04G02860.1 No alias Translation Initiation factor eIF- 4e [Interproscan]. 0.01 OrthoFinder
Sro189_g081380.1 Contig744.g8502 Eukaryotic translation initiation factor 4E 0.08 OrthoFinder
Transcript_contig_54900 54900 Translation Initiation factor eIF- 4e [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003743 translation initiation factor activity IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001040 TIF_eIF_4E 34 190
No external refs found!