lcl|VRMN01000001.1_cds_KAA8499784.1_8737 (KAA8499784)

Aliases : KAA8499784

Description : ABC transporter C family member 2

Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8499784.1_8737
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020684.9	tig00020684_g12858.t1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Transcript_contig_17	17	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder
lcl\|BLLF01000878.1_cds_GFH15643.1_10120	HaLaN_11904, GFH15643	ATP-binding cassette transporter	0.01	OrthoFinder
lcl\|BLLF01003175.1_cds_GFH26596.1_21073	HaLaN_24770, GFH26596	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Enrichment
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
BP	GO:0036260	RNA capping	IEP	Enrichment
MF	GO:0070568	guanylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	491	627
IPR003439	ABC_transporter-like_ATP-bd	1152	1300
IPR011527	ABC1_TM_dom	136	400
IPR011527	ABC1_TM_dom	812	1067

External Links

No external refs found!

lcl|VRMN01000001.1_cds_KAA8499784.1_8737 (KAA8499784)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation