lcl|VRMN01000001.1_cds_KAA8498746.1_7699 (KAA8498746)


Aliases : KAA8498746

Description : DNA-directed RNA polymerase II subunit 2


Gene families : OG_01_0001898 (OrthoFinder) Phylogenetic Tree(s): OG0001898_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498746.1_7699
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.16 tig00000158_g10129.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder
EOD30410 No alias RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2,... 0.01 OrthoFinder
OT_01G01700.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.03 OrthoFinder
TP06G01580.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase, beta... 0.02 OrthoFinder
Transcript_contig_78214 78214 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.01 OrthoFinder
Transcript_contig_79321 79321 RNA polymerase Rpb2, domain 5; DNA-directed RNA... 0.01 OrthoFinder
XM_002500494.1 MICPUN_93697, 93697 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61164.1_363 PRW61164 DNA-directed RNA polymerase II subunit RPB2 isoform A 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61165.1_364 PRW61165 DNA-directed RNA polymerase II subunit RPB2 isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 479 543
IPR007647 RNA_pol_Rpb2_5 696 741
IPR007644 RNA_pol_bsu_protrusion 41 453
IPR007120 DNA-dir_RNAP_su2_dom 748 1136
IPR007642 RNA_pol_Rpb2_2 212 405
IPR007646 RNA_pol_Rpb2_4 579 642
IPR007641 RNA_pol_Rpb2_7 1641 1722
No external refs found!