1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_15G03000.1

PTI_15G03000.1


Description : Replication protein A, OB domain; Replication factor-A protein 1, N-terminal; Replication factor A, C-terminal; OB-fold nucleic acid binding domain, AA-tRNA synthetase-type [Interproscan].


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G03000.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000823.19 tig00000823_g4546.t1 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder
Cre16.g651000 30777595 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.01 OrthoFinder
EOD05089 No alias Replication factor-A protein 1, N-terminal; Replication... 0.01 OrthoFinder
Transcript_contig_79125 79125 Replication factor A, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499455.1_8408 KAA8499455 Replication protein A 70 kDa DNA-binding subunit C 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 32 115
IPR004365 NA-bd_OB_tRNA 222 304
IPR031657 REPA_OB_2 331 425
IPR013955 Rep_factor-A_C 491 646
No external refs found!