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  5. PTI_11G03650.1

PTI_11G03650.1


Description : Signal recognition particle, SRP54 subunit, M-domain; Signal recognition particle SRP54, helical bundle; Signal recognition particle, SRP54 subunit, GTPase domain [Interproscan].


Gene families : OG_01_0003509 (OrthoFinder) Phylogenetic Tree(s): OG0003509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_11G03650.1
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021254.24 tig00021254_g19703.t1 Protein translocation.endoplasmic... 0.02 OrthoFinder
XM_002504313.1 MICPUN_85222, 85222 Type II secretory pathway family (SRP54.2) 0.02 OrthoFinder
XM_003064794.1 MicpuC2_23850, 23850 Type II secretory pathway family protein 0.02 OrthoFinder
lcl|BLLF01001677.1_cds_GFH20669.1_15146 HaLaN_17828, GFH20669 Signal recognition particle 54 kDa protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
MF GO:0008312 7S RNA binding IEA Interproscan
CC GO:0048500 signal recognition particle IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR004125 Signal_recog_particle_SRP54_M 340 447
IPR013822 Signal_recog_particl_SRP54_hlx 6 94
IPR000897 SRP54_GTPase_dom 114 309
No external refs found!