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  5. PTI_10G02350.1

PTI_10G02350.1


Description : Chromo domain; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_10G02350.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder
Cpa|evm.model.tig00000350.9 tig00000350_g24309.t1 CHD3-type chromatin-remodeling factor PICKLE... 0.04 OrthoFinder
Cpa|evm.model.tig00000983.26 tig00000983_g5915.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre09.g390000 30781417 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Dusal.0047s00031.1 33194295 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;... 0.01 OrthoFinder
EOD17057 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.02 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
EOD28310 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.02 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.03 OrthoFinder
Sro19_g013190.1 Contig446.g5983 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.06 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.07 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.06 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.05 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
TP05G00410.1 No alias SNF2-related, N-terminal domain; Bromodomain;... 0.03 OrthoFinder
TP07G00550.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
TP11G02170.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.04 OrthoFinder
TP12G03300.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.02 OrthoFinder
Vocar.0015s0331.1 32898932 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
Vocar.0016s0256.1 32897896 SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... 0.02 OrthoFinder
XM_003062821.1 MicpuC2_52710, 52710 FY-rich, N-terminal; Helicase, C-terminal; FY-rich,... 0.03 OrthoFinder
lcl|BLLF01001410.1_cds_GFH19126.1_13603 HaLaN_16027, GFH19126 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61596.1_539 PRW61596 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57711.1_8458 PRW57711 CHROMATIN REMODELING 5 isoform A 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493126.1_9427 KAA8493126 Chromatin structure-remodeling complex subunit snf21 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492149.1_5332 KAA8492149 Chromodomain-helicase-DNA-binding protein 6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR023780 Chromo_domain 258 291
IPR000330 SNF2_N 453 786
No external refs found!