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  5. PTI_07G00840.1

PTI_07G00840.1


Description : Ribosomal RNA methyltransferase, Spb1, C-terminal; Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381; Ribosomal RNA methyltransferase FtsJ domain [Interproscan].


Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G00840.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre12.g529500 30792231 No description available 0.27 OrthoFinder
Cz10g22050.t1 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.23 OrthoFinder
EOD10706 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.02 OrthoFinder
OT_16G00640.1 No alias Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.19 OrthoFinder
Sro945_g223150.1 Contig53.g396 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase 0.31 OrthoFinder
Transcript_contig_55971 55971 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.08 OrthoFinder
Transcript_contig_56474 56474 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.1 OrthoFinder
Vocar.0037s0081.1 32897572 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.05 OrthoFinder
XM_002508465.1 MICPUN_85499, 85499 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.15 OrthoFinder
XM_003057242.1 MicpuC2_14938, 14938 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.05 OrthoFinder
XM_003061074.1 MicpuC2_60535, 60535 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28754.1_23231 HaLaN_27296, GFH28754 2'-O-ribose RNA methyltransferase SPB1 homolog 0.03 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28756.1_23233 HaLaN_27298, GFH28756 Hypothetical protein 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56316.1_10006 PRW56316 AdoMet-dependent rRNA methyltransferase spb1 0.21 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012920 rRNA_MeTfrase_Spb1_C 806 984
IPR002877 rRNA_MeTrfase_FtsJ_dom 25 204
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 248 421
No external refs found!