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  5. PTI_06G04180.1

PTI_06G04180.1


Description : Small-subunit processome, Utp13; WD40 repeat [Interproscan].


Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_06G04180.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.61 tig00000704_g3346.t2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cpa|evm.model.tig00000704.62 tig00000704_g3346.t2 No description available 0.02 OrthoFinder
Cre07.g344050 30774587 Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder
Cz04g09230.t1 No alias WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.21 OrthoFinder
Dusal.0002s00015.1 33187975 WD40 repeat [Interproscan]. 0.03 OrthoFinder
EOD29254 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.09 OrthoFinder
OT_08G01420.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.1 OrthoFinder
Sro1027_g232980.1 Contig109.g1249 Transducin beta-like protein 3 0.16 OrthoFinder
Sro2695_g334900.1 Contig897.g9510 Transducin beta-like 3 0.05 OrthoFinder
TP04G06150.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.18 OrthoFinder
Transcript_contig_57084 57084 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.07 OrthoFinder
Vocar.0011s0002.1 32895390 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.07 OrthoFinder
XM_002503015.1 MICPUN_83206, 83206 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.18 OrthoFinder
XM_003058642.1 MicpuC2_518, 518 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01000847.1_cds_GFH15415.1_9892 HaLaN_11639, GFH15415 WD_REPEATS_REGION domain-containing protein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493381.1_9682 KAA8493381 Transducin beta-like protein 3 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 702 738
IPR001680 WD40_repeat 235 266
IPR001680 WD40_repeat 744 780
IPR001680 WD40_repeat 273 309
IPR001680 WD40_repeat 661 697
IPR001680 WD40_repeat 178 209
IPR001680 WD40_repeat 622 655
IPR001680 WD40_repeat 508 541
IPR013934 SSU_processome_Utp13 802 941
No external refs found!