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  5. PTI_04G03910.1

PTI_04G03910.1


Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G03910.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Sro117_g057280.1 Contig3937.g30172 Protein ligase Arkadia 0.03 OrthoFinder
Sro66_g037310.1 Contig399.g5401 Protein ligase RNF165 0.02 OrthoFinder
SymbC1.scaffold449.5 449.5 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
Transcript_contig_56055 56055 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 262 312
No external refs found!