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  5. PTI_03G03020.1

PTI_03G03020.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0005497 (OrthoFinder) Phylogenetic Tree(s): OG0005497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_03G03020.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000553.39 tig00000553_g2111.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cz14g22120.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491329.1_2330 KAA8491329 Putative U6 snRNA-associated Sm-like protein LSm5 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0005375 copper ion transmembrane transporter activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006825 copper ion transport IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
BP GO:0032006 regulation of TOR signaling IEP Enrichment
BP GO:0035434 copper ion transmembrane transport IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 10 81
No external refs found!