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Heatmap: Cluster_77 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
4h after treatment
4h after treatment,No nitrate
8h after treatment
8h after treatment,No nitrate
20C
20h after treatment
20h after treatment,No nitrate
20h after treatment,Nocodazole added
36h after treatment
36h after treatment,No phosphate
Blue light,10min after light change
Blue light,60min after light change
Bohlin
CCAP1055/1,20C
CCAP1055/1,20C,High CO2,OligoDT primed
CCAP1055/1,20C,Low CO2,OligoDT primed
CCAP1055/1,20C,Normal CO2,OligoDT primed
CCMP2561
CCMP2561 Nitrase Reductase Knockout
CCMP632
CCMP632,24h
CCMP632,48h
CCMP632,72h
CCMP632,High light acclimated WT
CCMP632,Low light acclimated WT
NEPCC640,8h,1000ppmv CO2
NEPCC640,8h,390 ppmv CO2
No light,8h after treatment
Pt-1
Pt-1 8.6
Pt-1 8.6,With nitrogen
Pt-1 8.6,Without nitrogen
Red light,0min before light change
UTEX 646,Blue light
UTEX 646,No light
0.48 1.84 0.48 1.75 -1.25 0.72 1.5 2.2 -0.14 1.01 -7.84 -6.56 -10.02 -7.35 0.14 0.69 0.75 -0.13 -1.7 -0.73 -0.25 0.29 -1.52 -1.29 -2.57 -7.14 -8.01 -3.45 -3.84 0.05 0.34 0.19 -6.42 -7.96 -
0.94 2.49 0.67 1.56 0.3 1.05 1.43 0.19 -0.12 1.35 0.19 0.71 -4.76 -2.18 -1.29 -0.77 0.28 0.16 -1.14 -4.03 0.36 0.21 -1.07 -3.8 -4.21 -2.92 -4.91 -2.75 -5.41 -2.9 -2.78 -1.97 0.62 -8.1 -
-0.19 -0.05 -0.43 -0.11 0.22 0.39 -0.04 0.04 0.35 0.14 - -8.88 0.61 - -0.09 -0.2 -1.79 0.47 0.75 -0.95 1.63 1.65 1.4 0.74 -0.58 0.79 0.49 -1.37 -1.22 -0.09 -0.85 -0.33 - - -
0.09 0.51 -0.1 0.57 0.23 0.42 0.7 -0.37 0.49 0.0 - - -2.1 - 0.36 0.06 -1.2 0.91 1.01 -0.76 1.74 1.29 0.45 0.07 -1.03 -0.87 -2.29 1.18 -1.4 0.02 -0.91 0.74 - - -
0.04 0.12 -0.07 0.24 0.25 0.36 0.24 0.42 0.39 0.09 - - -0.7 - -0.27 -1.04 0.04 0.5 0.35 -1.52 1.7 0.86 0.86 0.66 0.13 -0.25 -0.78 0.78 -1.18 0.55 -0.58 1.08 - - -
0.14 0.3 0.02 0.15 -0.05 0.33 0.36 -0.61 0.35 0.36 -1.82 -1.56 -0.97 -0.85 0.87 0.52 0.56 0.52 0.16 -0.64 0.42 0.4 0.08 0.12 -0.16 -0.29 -0.64 0.61 -0.45 0.17 0.0 0.32 -1.71 -0.47 -1.28
-0.19 0.56 -0.26 0.43 0.37 0.42 0.35 -0.98 0.75 0.83 0.11 0.4 -1.59 -1.09 0.78 0.37 0.11 0.22 0.28 0.41 0.86 1.19 0.78 -0.96 -1.2 -2.16 -3.39 0.81 -2.44 -1.51 -1.08 -1.81 0.43 -3.68 -4.27
-0.71 -0.09 -1.15 -0.42 -0.23 -0.6 0.09 -0.72 -0.0 0.07 -0.2 -0.39 -1.07 0.08 -2.01 -1.77 -1.96 -0.3 -0.14 0.64 1.44 1.54 0.34 -0.24 -0.96 -1.61 -0.53 1.23 0.01 -0.28 -0.73 0.14 -0.74 0.32 1.48
-0.44 -0.14 -0.52 -0.12 0.14 0.3 0.2 -0.93 0.75 0.31 -1.38 -1.58 -0.42 -0.85 0.07 -0.57 -0.18 0.51 0.31 0.19 0.61 -0.09 1.22 0.64 0.76 -2.02 -2.22 1.7 -0.99 -0.67 -0.72 -0.54 -1.35 -0.46 0.13
-0.49 -0.59 -0.39 -0.79 0.03 -0.48 -0.81 -1.43 -0.15 -0.27 -0.1 -0.39 -0.82 -0.45 0.66 0.37 0.95 -0.84 -0.89 0.64 1.54 0.7 1.78 -0.18 0.09 -0.72 -1.37 0.46 -0.88 -1.23 -0.85 -1.52 -0.33 -0.44 0.79
-0.08 0.65 0.03 0.61 0.19 0.54 0.67 -0.54 0.76 0.64 -0.28 -0.49 -1.39 -0.69 -0.25 -0.7 0.08 0.06 0.1 -0.8 1.34 0.94 1.23 -0.55 -0.23 -1.27 -1.76 0.69 -2.14 -1.54 -1.54 -1.46 -0.33 -1.41 -0.04
0.03 -0.12 -0.51 -0.38 -0.39 0.19 -0.4 -0.19 -0.02 0.07 -0.65 -0.51 -0.52 -0.46 0.77 -0.05 0.91 0.04 0.14 -0.57 0.85 0.66 -0.1 0.74 -0.22 -0.19 -0.54 0.52 -0.95 -0.07 0.43 -0.46 -0.39 -0.51 0.07
-0.52 0.34 -0.49 0.51 0.08 0.18 0.79 -1.04 0.61 0.68 -0.53 -0.64 0.69 0.38 -0.5 -0.38 -0.36 0.2 -0.03 0.7 0.59 -0.57 0.53 -0.07 0.45 -2.24 -4.24 0.75 0.32 -0.63 -0.87 -0.14 -0.38 -2.28 -0.15
-1.17 -0.27 -1.14 0.0 -0.16 -0.65 0.89 -1.02 -0.45 -0.17 -0.88 -0.64 1.01 0.25 -1.52 -1.49 -1.55 0.06 0.12 0.4 1.28 0.48 1.22 0.39 0.21 -1.55 -2.57 -1.66 0.26 0.64 -0.66 1.55 -0.88 -0.57 -0.13
-3.77 -1.52 -3.22 -0.62 0.89 0.01 0.1 -2.04 0.72 0.27 0.23 0.25 1.3 0.85 0.02 -0.62 -1.25 0.45 0.05 0.48 0.17 -1.77 2.0 -0.38 1.12 -1.48 -4.18 -0.32 -0.6 -2.28 -1.73 -2.37 0.08 -1.76 1.0
0.4 0.34 0.15 -0.03 0.31 0.54 0.53 -0.4 0.57 0.63 -0.3 -0.23 -0.67 -1.12 -0.9 -1.81 -0.09 -0.53 -0.22 -1.86 1.16 0.76 0.9 0.33 -0.89 -0.53 -1.0 1.26 -1.26 -0.71 -0.67 -0.86 -0.27 -0.14 -0.15
-0.39 0.24 -0.35 0.33 -0.0 -0.06 0.59 -0.71 0.14 0.25 0.78 0.32 0.02 0.04 -1.22 -0.79 -2.46 0.16 0.23 -0.34 0.64 0.44 0.65 -0.11 0.07 -1.62 -1.74 -0.08 0.24 -0.18 -0.86 0.44 0.15 -0.12 0.43
-0.63 -0.1 -0.79 -0.12 0.12 0.61 0.34 0.41 0.66 0.56 -1.2 -1.4 0.71 -0.07 0.88 -0.16 0.83 0.06 -0.02 0.49 0.18 -0.91 0.01 0.77 0.55 0.25 -1.09 -0.54 -0.22 -0.84 -0.47 -0.87 -1.03 -2.5 -0.39
0.31 0.67 0.4 0.51 -0.99 0.62 0.42 -0.03 0.76 0.89 -1.0 -0.81 -2.25 -2.13 0.78 0.22 0.17 0.21 0.35 -1.35 0.91 1.33 -0.03 0.04 -3.13 -0.22 0.58 0.42 -2.33 -0.71 -0.11 -1.97 -0.75 -2.78 -2.01
0.15 0.51 0.15 0.53 -0.14 0.51 0.53 -0.29 0.64 0.57 -0.6 -0.46 -0.4 -0.76 -0.19 -1.27 -0.06 -0.9 -0.66 -0.54 1.38 0.98 0.99 -0.19 -0.7 -1.41 -1.58 0.44 -1.1 -1.26 -1.95 -0.66 -0.45 0.24 0.7
0.28 1.71 0.29 1.31 -0.57 0.53 1.21 0.93 0.05 0.95 - - 0.11 - 0.44 1.13 -0.22 0.25 -0.73 -0.67 0.07 0.66 -0.63 -1.4 -2.31 0.45 -0.93 -2.17 -2.53 0.06 0.12 0.4 - - -
-0.07 0.42 -0.19 0.37 0.03 -0.51 -0.31 -0.29 -0.34 0.1 0.96 0.9 -0.96 -0.26 -1.82 -1.56 -4.06 0.31 0.49 -0.65 1.26 1.62 0.66 -0.22 -1.67 -0.76 -0.52 -0.41 -0.74 -0.58 -0.54 -0.8 1.01 -0.29 -0.78
-1.34 -0.15 -1.45 0.1 -0.11 -0.35 0.22 -1.64 0.52 0.07 -0.77 -0.51 0.16 -0.19 0.42 0.55 -2.37 0.71 0.71 0.13 0.73 -0.72 1.29 -1.29 0.3 -1.13 -2.71 1.17 0.15 -1.37 -2.25 -0.63 -0.52 -0.5 1.58
0.18 1.89 0.47 1.23 -2.64 0.54 0.94 1.15 -0.44 0.01 0.23 0.87 -1.42 -0.42 -0.98 -0.09 -1.17 -0.28 -1.22 -2.74 -0.98 0.5 -2.39 -0.97 -5.04 1.45 -0.55 -2.46 -3.62 -0.79 0.25 -0.88 1.25 -1.43 -3.03
-0.34 0.31 -0.6 0.34 0.72 0.4 0.97 -0.81 0.75 0.62 -0.29 -0.09 0.72 1.02 -0.41 -0.59 -0.46 0.28 0.2 0.13 0.23 -0.2 0.75 0.17 0.5 -2.2 -3.62 -0.96 -1.06 -0.47 -0.7 -0.15 -0.2 -2.94 -0.95
-0.3 0.1 -0.36 -0.01 0.18 0.21 0.06 0.68 0.21 0.33 -0.59 -0.49 -0.49 -0.23 -0.06 -0.13 -0.23 -0.3 -1.03 0.85 1.0 1.17 0.87 -0.31 -0.88 -0.8 -1.37 -0.23 -0.35 0.09 -0.11 0.4 -0.58 -0.44 -1.05
0.02 0.22 -0.05 0.25 -0.37 0.2 0.48 -0.32 0.13 0.41 -0.7 -0.33 -1.13 0.04 -0.26 -1.04 0.35 -0.56 -1.09 0.95 1.58 1.29 1.16 -0.27 -1.4 -0.9 0.3 0.24 -1.41 -1.37 -1.78 -1.29 -0.44 -0.67 -0.11
-0.36 0.42 -0.58 0.55 -0.88 -1.27 -0.11 -1.79 -0.53 -0.5 0.67 0.92 -2.28 0.14 -0.22 1.58 -1.28 0.54 0.71 -1.26 1.42 1.53 2.13 -2.69 -3.03 -2.6 -3.94 0.17 -2.63 -3.25 -3.11 -3.07 0.65 -1.8 -0.53
-1.12 1.18 -1.44 0.68 0.07 -0.16 0.71 -0.81 0.04 0.99 -1.85 -1.18 0.39 -1.6 -1.4 -0.12 -0.27 0.62 -0.32 1.73 0.37 0.85 1.16 -2.07 -0.63 -2.8 -1.54 1.53 -1.58 -0.84 -0.69 -2.53 -1.6 -2.06 0.23
0.6 2.14 0.55 1.63 -0.36 0.88 1.13 0.34 -0.36 1.08 -0.76 -0.27 -1.1 -2.47 -0.12 0.88 -1.07 -0.31 -2.04 -1.81 0.16 1.09 -0.29 -1.65 -3.4 -0.77 -3.3 -2.56 -3.9 -0.58 -0.45 0.19 -0.2 -3.47 -5.11
0.16 1.32 -0.26 0.83 0.17 -0.06 0.63 0.16 -0.95 0.46 -1.32 -0.5 -6.56 -3.81 -0.5 0.85 -3.06 0.62 -0.49 -1.69 1.31 0.82 1.13 -1.3 -1.26 -0.31 -0.59 0.53 -1.1 0.29 0.84 0.37 -0.96 -1.94 -7.89
-1.08 -0.07 -1.26 0.12 0.12 0.29 0.87 -1.04 0.48 0.44 -0.57 -0.48 0.67 0.31 -0.91 -1.05 -1.48 0.44 0.28 0.35 0.13 0.0 0.88 0.27 0.92 -2.4 -3.31 -1.85 0.39 0.25 -1.08 1.19 -0.23 -0.85 -0.03
0.41 0.49 0.06 0.08 0.13 0.31 -0.01 -0.23 0.04 0.29 -0.41 -0.17 -1.81 0.6 0.01 -0.64 0.31 0.01 0.17 -0.3 0.7 0.45 0.38 -0.53 -1.35 -0.68 -1.04 0.35 -1.09 -0.16 -0.13 -0.03 -0.32 0.66 0.09
-0.65 0.03 -0.27 0.03 -1.15 -0.06 0.38 -0.01 0.14 0.23 -1.59 -1.41 -0.2 -1.09 -0.81 -1.21 -0.84 0.59 0.71 -0.32 1.75 0.98 0.54 1.71 0.54 -4.59 -3.74 0.63 -0.12 -0.33 -0.85 -0.17 -1.35 -1.71 -0.15
-0.18 0.81 0.11 0.58 -0.43 0.31 0.84 -0.54 0.31 0.57 -1.44 -1.0 -0.84 -1.22 -1.1 -1.28 -0.27 0.07 0.62 -0.52 1.22 0.84 0.84 0.21 -0.17 -2.06 -3.46 0.54 -1.57 -0.53 -1.12 0.07 -1.13 -0.34 1.18
-0.46 0.26 -0.67 0.46 -0.06 -0.37 0.73 -0.42 -0.14 0.21 -9.32 -7.97 0.97 -8.41 -0.89 -0.83 -1.55 0.98 0.75 -0.95 1.22 1.31 1.22 -1.27 -1.78 -0.2 -0.73 -0.15 0.13 0.92 -1.2 1.87 -11.44 -9.29 -10.65
0.37 -0.29 -0.16 -0.95 -0.69 0.49 -0.89 0.22 -0.14 -0.15 -1.35 -1.28 -1.62 -1.19 1.21 0.02 1.93 -0.78 0.15 -1.21 1.11 0.55 -0.35 1.31 -0.03 -0.42 0.15 -0.16 -1.17 -0.2 -0.29 -0.88 -1.09 -0.82 -0.32
-0.58 -0.4 -0.61 -0.58 -0.13 -0.16 -0.35 -0.32 -0.0 0.06 -0.43 -0.13 -0.19 -0.38 -0.71 -1.32 -0.61 0.06 -0.51 -0.34 1.54 0.84 1.15 1.19 1.03 -1.15 -1.68 -1.03 -0.12 -0.03 -0.29 0.17 -0.2 0.31 -0.26
-0.15 -0.35 -0.24 -0.74 0.06 0.16 -0.69 -0.35 0.2 -0.05 -0.55 -0.5 -0.64 -0.89 0.54 -0.47 0.82 -0.03 -0.02 -0.17 1.67 1.34 1.32 -0.02 -0.38 -0.51 -1.03 0.56 -1.55 -1.14 -0.99 -1.14 -0.52 -1.07 0.34
0.41 1.88 0.28 1.19 -0.54 0.48 0.66 -0.0 -0.3 0.52 -0.55 -0.22 -0.38 0.77 -1.09 -0.28 -0.28 -0.94 -1.19 -1.07 -0.17 0.8 -0.07 -0.72 -2.24 0.2 0.26 -1.75 -2.61 0.35 0.79 -0.67 -0.23 -2.57 -2.86
0.19 0.49 0.75 0.65 -0.94 -0.1 -0.29 -0.63 -0.02 0.59 0.78 0.71 -0.68 -0.45 -0.26 0.58 -1.99 0.34 0.65 -0.94 0.42 1.81 -0.49 -0.78 -3.02 -0.07 -1.25 0.14 -0.71 -1.41 -1.27 -2.66 0.6 0.09 -2.02
0.41 0.7 -0.06 0.62 -0.09 0.62 0.92 0.32 0.31 0.28 -5.27 -5.34 1.35 -5.47 -0.72 -0.84 -2.55 0.81 1.03 -1.83 0.63 0.96 -0.25 0.06 -2.28 -2.16 -1.96 -0.62 -0.57 0.88 -0.99 1.7 -6.56 -1.94 -2.41
-1.67 -0.1 -1.23 -0.36 0.03 -0.73 0.12 -1.84 -0.32 -0.06 0.72 0.85 -0.96 0.8 -0.03 -0.69 -0.42 -0.87 -0.14 -1.5 2.04 1.82 2.31 -2.2 -1.89 -1.39 -1.95 0.18 -0.92 - - - 0.96 -2.76 -1.1
-0.06 0.82 -0.26 0.73 0.06 0.57 0.52 0.2 0.6 0.54 -1.51 -1.67 -1.04 -2.81 1.13 0.79 0.42 -0.1 0.52 -0.46 1.04 0.46 0.18 -0.23 -0.67 -0.06 -0.81 0.59 -1.13 -1.1 -0.26 -2.14 -1.45 -1.04 -2.76
-0.32 0.12 -0.43 0.08 0.57 0.48 0.27 0.11 0.62 0.38 -0.3 0.07 0.38 -0.22 -0.13 -0.55 -0.29 0.12 -0.22 0.3 0.64 0.23 -0.15 0.53 -0.45 0.58 0.24 -1.4 -0.98 -0.46 0.01 -1.59 0.05 -0.61 -0.78
-1.59 -0.86 -1.96 -0.93 0.49 -0.83 -0.58 -1.92 0.09 -0.55 0.79 -0.18 -2.93 -0.9 0.77 0.29 0.33 -0.28 -0.27 0.11 1.29 2.04 1.85 -1.61 0.73 -9.1 -8.45 1.78 -0.5 -2.67 -2.87 -2.55 -0.39 -1.2 -0.93
0.68 2.21 0.33 1.5 -0.17 0.48 1.19 -0.2 -0.2 0.95 -1.08 -0.43 -0.94 -2.01 -0.08 0.82 0.72 -1.28 -2.08 -0.3 0.2 1.23 -1.31 -1.84 -4.59 -0.27 -2.25 -2.46 -3.92 -0.63 0.06 -0.73 -0.44 -3.17 -5.96
-0.72 0.3 -0.81 0.12 -0.22 0.51 0.34 -0.99 0.58 0.75 -0.01 0.22 -1.77 0.53 0.55 0.45 -0.12 0.21 0.43 -0.3 1.06 1.35 0.79 0.28 0.55 -0.98 -2.72 -1.3 -3.2 -0.74 -0.18 -1.73 0.27 -3.96 -4.45
0.66 2.27 0.66 1.66 -1.14 0.9 1.07 0.19 -0.62 0.86 -2.12 -1.29 -3.88 -3.2 0.78 1.32 0.74 0.02 -2.05 -1.89 0.32 0.39 -0.71 -2.46 -3.42 -0.03 -3.36 -3.03 -5.29 -0.55 -0.09 -0.16 -1.28 -6.07 -8.71
-0.08 -0.13 -0.3 -0.15 -0.1 0.16 0.02 -0.63 0.41 0.37 0.32 -0.38 -0.16 -0.6 0.11 -0.2 -0.27 -0.12 -0.18 -0.01 0.91 0.98 0.83 0.43 -0.48 -0.47 -1.0 0.13 -0.63 -0.79 -0.43 -1.06 -0.2 0.08 0.64
0.1 1.37 -0.85 0.1 1.28 0.16 -0.5 -1.14 -1.52 0.66 - - 0.9 - -0.43 0.42 -0.76 -0.05 -1.61 0.86 1.48 2.66 0.12 -1.9 -4.0 0.0 -0.53 -2.36 -1.69 -0.41 0.7 -1.62 - - -
-0.6 0.86 -1.14 0.71 -0.99 0.35 1.45 0.04 0.62 0.98 - -8.27 2.21 -7.75 -3.56 -0.79 -5.69 1.15 1.36 -0.6 -0.56 0.45 -0.26 -0.49 -2.63 -1.81 -1.72 -1.26 0.12 0.53 -1.11 1.51 - -5.93 -
0.67 0.68 0.21 0.29 0.09 0.54 0.41 -0.16 0.31 0.36 - -28.81 0.75 - 0.04 -0.59 -2.63 0.6 0.59 -0.96 1.12 1.1 0.51 0.0 -1.74 -0.36 -0.13 -0.39 -0.91 0.72 -0.03 1.29 - - -6.97
1.16 2.49 0.49 1.49 -0.21 1.06 0.87 -0.32 -0.28 1.08 - - - - 0.09 1.34 -1.7 0.69 -0.77 -1.32 0.65 1.3 -0.5 -3.24 -3.91 - - -2.8 -3.27 -0.13 0.51 -1.27 - - -
-0.58 0.15 -0.84 -0.02 -0.11 0.2 0.36 -0.77 0.76 0.64 0.58 0.44 0.04 -1.57 0.58 0.46 0.89 0.27 0.49 0.59 -0.01 0.75 0.38 -1.16 -2.4 -1.35 -1.44 -0.48 -0.76 -1.16 -0.77 -1.98 0.97 0.38 -2.38

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.