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  5. PTI_02G04620.1

PTI_02G04620.1


Description : SAM-dependent methyltransferase RsmB/NOP2-type; Ribosomal RNA small subunit methyltransferase F, N-terminal [Interproscan].


Gene families : OG_01_0002458 (OrthoFinder) Phylogenetic Tree(s): OG0002458_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G04620.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000114.21 tig00000114_g6030.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
Cre06.g273413 30779691 Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder
Cz03g03120.t1 No alias Ribosomal RNA small subunit methyltransferase F,... 0.22 OrthoFinder
Dusal.0002s00030.1 33187933 Ribosomal RNA small subunit methyltransferase F,... 0.07 OrthoFinder
EOD14956 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.1 OrthoFinder
OT_03G00060.1 No alias Ribosomal RNA small subunit methyltransferase F,... 0.18 OrthoFinder
Sro836_g209070.1 Contig1441.g13256 25S rRNA (cytosine(2870)-C(5))-methyltransferase 0.36 OrthoFinder
SymbC1.scaffold6213.3 6213.3 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.01 OrthoFinder
TP05G01050.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type;... 0.14 OrthoFinder
Transcript_contig_4617 4617 Ribosomal RNA small subunit methyltransferase F,... 0.1 OrthoFinder
Vocar.0002s0351.1 32890574 SAM-dependent methyltransferase RsmB/NOP2-type;... 0.06 OrthoFinder
XM_002507880.1 MICPUN_97762, 97762 Ribosomal RNA small subunit methyltransferase F,... 0.2 OrthoFinder
XM_003056188.1 MicpuC2_2498, 2498 Ribosomal RNA small subunit methyltransferase F,... 0.03 OrthoFinder
lcl|BLLF01001069.1_cds_GFH16902.1_11379 HaLaN_13422, GFH16902 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56656.1_9866 PRW56656 Ribosomal RNA methyltransferase NOP2 0.12 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494604.1_3134 KAA8494604 Putative 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR031341 Methyltr_RsmF_N 219 309
IPR001678 MeTrfase_RsmB/NOP2 313 520
No external refs found!