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  5. PTI_01G01590.1

PTI_01G01590.1


Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G01590.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cre02.g097800 30785105 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD21422 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD34349 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Sro183_g079600.1 Contig3056.g24305 Multiple drug resistance-associated protein-like transporter 1 0.05 OrthoFinder
SymbC1.scaffold7045.1 7045.1 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
TP07G05800.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0028s0030.1 32895600 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
lcl|BLLF01003949.1_cds_GFH28596.1_23073 HaLaN_27113, GFH28596 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33948.1_2945 PRW33948 ABC transporter isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 472 607
IPR003439 ABC_transporter-like_ATP-bd 1084 1233
IPR011527 ABC1_TM_dom 105 362
IPR011527 ABC1_TM_dom 783 1011
No external refs found!