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  5. OT_13G02300.1

OT_13G02300.1


Description : Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu-like, domain 2; Transcription factor, GTP-binding domain [Interproscan].


Gene families : OG_01_0000147 (OrthoFinder) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_13G02300.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021352.57 tig00021352_g20724.t1 Protein biosynthesis.translation elongation.eEF1A... 0.02 OrthoFinder
Cre06.g263450 30779125 Elongation factor 1-alpha OS=Glycine max 0.01 OrthoFinder
Cre06.g284750 30779093, EFG3 Protein biosynthesis.translation termination.eRF3... 0.09 OrthoFinder
Cre12.g498600 30792534 Elongation factor 1-alpha OS=Glycine max 0.01 OrthoFinder
Cz02g32220.t1 No alias Translation elongation factor EFTu/EF1A, C-terminal;... 0.04 OrthoFinder
Cz11g25130.t1 No alias Translation elongation factor EFTu/EF1A, C-terminal;... 0.05 OrthoFinder
Cz16g05140.t1 No alias Translation elongation factor EFTu/EF1A, C-terminal;... 0.04 OrthoFinder
Dusal.0036s00015.1 33190426 Transcription factor, GTP-binding domain; Translation... 0.02 OrthoFinder
Dusal.0162s00022.1 33196140 Transcription factor, GTP-binding domain; Translation... 0.07 OrthoFinder
Dusal.0317s00001.1 33192309 Transcription factor, GTP-binding domain; Translation... 0.05 OrthoFinder
EOD04843 No alias Translation elongation factor EFTu-like, domain 2;... 0.04 OrthoFinder
EOD28679 No alias Transcription factor, GTP-binding domain [Interproscan]. 0.03 OrthoFinder
EOD35459 No alias Putative EF-1 alpha/Tu like protein [Ensembl]. 0.05 OrthoFinder
PTI_03G01060.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.03 OrthoFinder
PTI_05G03120.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.04 OrthoFinder
PTI_13G03040.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.1 OrthoFinder
Sro4_g003480.1 Contig3815.g29266 Elongation factor 1-alpha (Fragment) 0.05 OrthoFinder
SymbC1.scaffold16515.1 16515.1 Transcription factor, GTP-binding domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold16515.2 16515.2 Translation elongation factor EFTu/EF1A, C-terminal... 0.02 OrthoFinder
SymbC1.scaffold9283.4 9283.4 Transcription factor, GTP-binding domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold9506.2 9506.2 Transcription factor, GTP-binding domain; Translation... 0.02 OrthoFinder
TP05G05990.1 No alias Translation elongation factor EFTu/EF1A, C-terminal;... 0.03 OrthoFinder
Vocar.0002s0002.1 32890872 Translation elongation factor EFTu/EF1A, C-terminal;... 0.04 OrthoFinder
Vocar.0002s0517.1 32891166 Translation elongation factor EFTu/EF1A, C-terminal;... 0.04 OrthoFinder
Vocar.0006s0271.1 32894224 Translation elongation factor EFTu/EF1A, C-terminal;... 0.03 OrthoFinder
XM_002502797.1 MICPUN_91047, 91047 Translation elongation factor EF-1alpha/Tu (TEF1.1) 0.04 OrthoFinder
XM_002502902.1 MICPUN_91112, 91112 Translation elongation factor EF-1alpha/Tu (TEF1.2) 0.02 OrthoFinder
XM_002505202.1 MICPUN_53407, 53407 Elongation factor tu 0.02 OrthoFinder
XM_003058760.1 MicpuC2_33445, 33445 Translation elongation factor EFTu-like, domain 2;... 0.08 OrthoFinder
XM_003060323.1 MicpuC2_60100, 60100 Elongation factor tu 0.06 OrthoFinder
lcl|BLLF01005123.1_cds_GFH30755.1_25232 HaLaN_29670, GFH30755 Eukaryotic translation elongation factor 1 alpha 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58110.1_8184 PRW58110 Elongation factor 0.03 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50937.1_1128 PRW50937 Eukaryotic translation elongation factor 1 alpha 2 0.05 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51008.1_1130 PRW51008 Eukaryotic translation elongation factor 1 alpha 2 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494988.1_3518 KAA8494988 Elongation factor 1-alpha 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 355 462
IPR000795 T_Tr_GTP-bd_dom 5 243
IPR004161 EFTu-like_2 275 347
No external refs found!