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  5. OT_04G02170.1

OT_04G02170.1


Description : S1 domain; AAA+ ATPase domain; Helicase, C-terminal; Helicase-associated domain; Domain of unknown function DUF1605 [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G02170.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000984.27 tig00000984_g6004.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder
Cre08.g358563 30773457 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder
Cre24.g755347 30782914 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder
Cz01g23210.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Cz16g14170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
EOD29635 No alias ATP-dependent RNA helicase [Ensembl]. 0.03 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.02 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.05 OrthoFinder
PTI_07G04380.1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.01 OrthoFinder
SymbC1.scaffold3931.2 3931.2 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
TP01G06540.1 No alias Domain of unknown function DUF1605; S1 domain; Helicase,... 0.02 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
Transcript_contig_55987 55987 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
XM_002500528.1 MICPUN_97165, 97165 Helicase, C-terminal; Helicase-associated domain; Domain... 0.05 OrthoFinder
XM_002501417.1 MICPUN_58037, 58037 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_002507667.1 MICPUN_51830, 51830 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002508712.1 MICPUN_97967, 97967 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
lcl|BLLF01001160.1_cds_GFH17514.1_11991 HaLaN_14169, GFH17514 Helicase-associated domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001168.1_cds_GFH17561.1_12038 HaLaN_14223, GFH17561 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|BLLF01002785.1_cds_GFH25342.1_19819 HaLaN_23284, GFH25342 Helicase-associated domain; Domain of unknown function... 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59127.1_7530 PRW59127 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.06 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.06 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.04 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20509.1_5500 PRW20509 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 KAA8492270 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006166 purine ribonucleoside salvage IEP Enrichment
BP GO:0006190 inosine salvage IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042278 purine nucleoside metabolic process IEP Enrichment
BP GO:0042451 purine nucleoside biosynthetic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043094 cellular metabolic compound salvage IEP Enrichment
BP GO:0043101 purine-containing compound salvage IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043174 nucleoside salvage IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046102 inosine metabolic process IEP Enrichment
BP GO:0046103 inosine biosynthetic process IEP Enrichment
BP GO:0046128 purine ribonucleoside metabolic process IEP Enrichment
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050483 IMP 5'-nucleotidase activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 1023 1098
IPR003029 S1_domain 172 244
IPR003593 AAA+_ATPase 500 636
IPR007502 Helicase-assoc_dom 877 965
IPR001650 Helicase_C 685 815
No external refs found!