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  5. OT_02G00620.1

OT_02G00620.1


Description : Dyskerin-like; tRNA pseudouridylate synthase B, C-terminal; PUA domain; Pseudouridine synthase II, N-terminal [Interproscan].


Gene families : OG_01_0003314 (OrthoFinder) Phylogenetic Tree(s): OG0003314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_02G00620.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000553.10 tig00000553_g2080.t1 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder
Cre03.g172950 30787716, CBF5 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder
Cz05g27150.t1 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.02 OrthoFinder
EOD34035 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.01 OrthoFinder
Sro31_g020400.1 Contig420.g5635 Centromere/microtubule-binding protein CBF5 0.03 OrthoFinder
Vocar.0015s0162.1 32899133 tRNA pseudouridylate synthase B, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01001744.1_cds_GFH21015.1_15492 HaLaN_18231, GFH21015 PUA domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030975 thiamine binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0042357 thiamine diphosphate metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 81 198
IPR012960 Dyskerin-like 20 77
IPR002478 PUA 269 341
IPR032819 TruB_C 199 265
No external refs found!