XM_003062998.1 (MicpuC2_71074, 71074)

Aliases : MicpuC2_71074, 71074

Description : RNA helicase, splicing factor

Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003062998.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358563	30773457	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder
Cz12g28100.t1	No alias	Helicase, C-terminal; Domain of unknown function...	0.02	OrthoFinder
Cz14g08150.t1	No alias	Helicase, C-terminal; Domain of unknown function...	0.02	OrthoFinder
Dusal.0072s00015.1	33199066	Helicase-associated domain; Helicase, C-terminal; Domain...	0.02	OrthoFinder
EOD26105	No alias	ATP-dependent RNA helicase [Ensembl].	0.02	OrthoFinder
PTI_11G03860.1	No alias	Helicase, C-terminal; Helicase-associated domain; Domain...	0.02	OrthoFinder
Transcript_contig_89480	89480	Helicase-associated domain; Helicase, C-terminal; Domain...	0.01	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495728.1_1726	KAA8495728	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATPase, acting on DNA	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Enrichment
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
BP	GO:0006534	cysteine metabolic process	IEP	Enrichment
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Enrichment
BP	GO:0006563	L-serine metabolic process	IEP	Enrichment
MF	GO:0008374	O-acyltransferase activity	IEP	Enrichment
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Enrichment
BP	GO:0009069	serine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Enrichment
MF	GO:0016412	serine O-acyltransferase activity	IEP	Enrichment
MF	GO:0016413	O-acetyltransferase activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
BP	GO:0019344	cysteine biosynthetic process	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	630	714
IPR007502	Helicase-assoc_dom	433	536
IPR001650	Helicase_C	241	368
IPR011545	DEAD/DEAH_box_helicase_dom	29	194

External Links

No external refs found!