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  5. XM_003059717.1

XM_003059717.1 (MicpuC2_18664, 18664)


Aliases : MicpuC2_18664, 18664

Description : Small-subunit processome, Utp12; WD40 repeat [Interproscan].


Gene families : OG_01_0002276 (OrthoFinder) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003059717.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.26 tig00021721_g23228.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cre10.g438700 30790009 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder
Cz06g14100.t1 No alias WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.03 OrthoFinder
Dusal.0249s00016.1 33195366 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.04 OrthoFinder
EOD19547 No alias WD40 repeat [Interproscan]. 0.07 OrthoFinder
OT_14G00820.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.13 OrthoFinder
PTI_02G04550.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Sro1810_g299130.1 Contig2202.g18320 WD repeat domain 3 0.14 OrthoFinder
TP06G03730.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_56229 56229 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Vocar.0001s1320.1 32884378 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.02 OrthoFinder
XM_002505442.1 MICPUN_65501, 65501 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01001813.1_cds_GFH21363.1_15840 HaLaN_18652, GFH21363 WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59665.1_6392 PRW59665 WD repeat-containing 3 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 103 135
IPR001680 WD40_repeat 144 189
IPR001680 WD40_repeat 68 93
IPR001680 WD40_repeat 697 733
IPR001680 WD40_repeat 506 536
IPR001680 WD40_repeat 656 692
IPR001680 WD40_repeat 617 649
IPR007148 SSU_processome_Utp12 858 959
No external refs found!