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  5. XM_003057597.1

XM_003057597.1 (MicpuC2_45432, 45432)


Aliases : MicpuC2_45432, 45432

Description : Coatomer, WD associated region; Coatomer, alpha subunit, C-terminal; WD40 repeat [Interproscan].


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003057597.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.152 tig00000144_g9146.t1 Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder
Cre13.g565850 30784724, COPA1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder
Cz02g40240.t1 No alias Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
Cz02g40250.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Dusal.1106s00002.1 33203688 Coatomer, WD associated region [Interproscan]. 0.03 OrthoFinder
EOD07013 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.03 OrthoFinder
OT_04G01560.1 No alias Coatomer, WD associated region; Coatomer, alpha subunit,... 0.03 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.02 OrthoFinder
Transcript_contig_78115 78115 Coatomer, alpha subunit, C-terminal [Interproscan]. 0.04 OrthoFinder
Transcript_contig_89172 89172 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Vocar.0028s0031.1 32895618 WD40 repeat; Coatomer, alpha subunit, C-terminal;... 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58160.1_7595 PRW58160 Coatomer subunit alpha-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006476 protein deacetylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
BP GO:0016575 histone deacetylation IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
CC GO:0034719 SMN-Sm protein complex IEP Enrichment
BP GO:0035601 protein deacylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098732 macromolecule deacylation IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 369 770
IPR010714 Coatomer_asu_C 820 1237
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 242 277
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 199 232
IPR001680 WD40_repeat 84 121
No external refs found!