XM_003055558.1 (MicpuC2_45178, 45178)

Aliases : MicpuC2_45178, 45178

Description : RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 7; RNA polymerase II, heptapeptide repeat, eukaryotic; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit [Interproscan].

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003055558.1
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.15	tig00000241_g20874.t1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder
Cpa\|evm.model.tig00022075.6	tig00022075_g23568.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre16.g680900	30777306, RPB1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder
Cz01g33020.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.02	OrthoFinder
Sro544_g163690.1	Contig3214.g25423	DNA-directed RNA polymerase subunit beta' (Fragment)	0.01	OrthoFinder
TP01G02450.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.01	OrthoFinder
TP06G07080.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_002503483.1	MICPUN_94662, 94662	RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,...	0.03	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Enrichment
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Enrichment
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003735	structural constituent of ribosome	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0004827	proline-tRNA ligase activity	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005666	RNA polymerase III complex	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005741	mitochondrial outer membrane	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Enrichment
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006383	transcription by RNA polymerase III	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006401	RNA catabolic process	IEP	Enrichment
BP	GO:0006402	mRNA catabolic process	IEP	Enrichment
BP	GO:0006412	translation	IEP	Enrichment
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006518	peptide metabolic process	IEP	Enrichment
CC	GO:0008023	transcription elongation factor complex	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
MF	GO:0008452	RNA ligase activity	IEP	Enrichment
MF	GO:0009055	electron transfer activity	IEP	Enrichment
BP	GO:0009057	macromolecule catabolic process	IEP	Enrichment
BP	GO:0010629	negative regulation of gene expression	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Enrichment
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0017069	snRNA binding	IEP	Enrichment
MF	GO:0017070	U6 snRNA binding	IEP	Enrichment
BP	GO:0019538	protein metabolic process	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
MF	GO:0030623	U5 snRNA binding	IEP	Enrichment
CC	GO:0030880	RNA polymerase complex	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
CC	GO:0031968	organelle outer membrane	IEP	Enrichment
CC	GO:0035145	exon-exon junction complex	IEP	Enrichment
BP	GO:0043043	peptide biosynthetic process	IEP	Enrichment
BP	GO:0043085	positive regulation of catalytic activity	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043603	cellular amide metabolic process	IEP	Enrichment
BP	GO:0043604	amide biosynthetic process	IEP	Enrichment
BP	GO:0044093	positive regulation of molecular function	IEP	Enrichment
BP	GO:0044248	cellular catabolic process	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
BP	GO:0044267	cellular protein metabolic process	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
BP	GO:0110154	RNA decapping	IEP	Enrichment
BP	GO:0110156	methylguanosine-cap decapping	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	505	667
IPR000722	RNA_pol_asu	333	501
IPR007075	RNA_pol_Rpb1_6	871	1060
IPR007081	RNA_pol_Rpb1_5	805	1400
IPR007073	RNA_pol_Rpb1_7	1145	1278
IPR007080	RNA_pol_Rpb1_1	15	331
IPR000684	RNA_pol_II_repeat_euk	1604	1617
IPR000684	RNA_pol_II_repeat_euk	1632	1645
IPR000684	RNA_pol_II_repeat_euk	1563	1575
IPR000684	RNA_pol_II_repeat_euk	1550	1562
IPR000684	RNA_pol_II_repeat_euk	1536	1549
IPR000684	RNA_pol_II_repeat_euk	1543	1556
IPR000684	RNA_pol_II_repeat_euk	1618	1631
IPR000684	RNA_pol_II_repeat_euk	1669	1684
IPR000684	RNA_pol_II_repeat_euk	1512	1535
IPR000684	RNA_pol_II_repeat_euk	1529	1542
IPR000684	RNA_pol_II_repeat_euk	1646	1656
IPR000684	RNA_pol_II_repeat_euk	1576	1589
IPR000684	RNA_pol_II_repeat_euk	1590	1603
IPR007083	RNA_pol_Rpb1_4	697	798

External Links

No external refs found!

XM_003055558.1 (MicpuC2_45178, 45178)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation