XM_002505728.1 (MICPUN_103834, 103834)


Aliases : MICPUN_103834, 103834

Description : OB-fold nucleic acid binding domain, AA-tRNA synthetase-type; Aminoacyl-tRNA synthetase, class II (D/K/N) [Interproscan].


Gene families : OG_01_0001772 (OrthoFinder) Phylogenetic Tree(s): OG0001772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505728.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020510.55 tig00020510_g9836.t1 Lysine--tRNA ligase OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cre03.g160500 30788286 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Cz01g23090.t1 No alias Aminoacyl-tRNA synthetase, class II (D/K/N) [Interproscan]. 0.07 OrthoFinder
Cz01g23100.t1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.06 OrthoFinder
Dusal.0028s00015.1 33198487 Aminoacyl-tRNA synthetase, class II (D/K/N); OB-fold... 0.02 OrthoFinder
EOD34193 No alias Putative Lysyl-tRNA synthetase [Ensembl]. 0.03 OrthoFinder
OT_14G02090.1 No alias Aminoacyl-tRNA synthetase, class II (D/K/N); OB-fold... 0.04 OrthoFinder
PTI_22G00380.1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.02 OrthoFinder
Sro1601_g285200.1 Contig4269.g32304 Lysine--tRNA ligase 0.09 OrthoFinder
TP08G03930.1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.02 OrthoFinder
Transcript_contig_54752 54752 OB-fold nucleic acid binding domain, AA-tRNA... 0.03 OrthoFinder
Vocar.0005s0287.1 32883756 OB-fold nucleic acid binding domain, AA-tRNA... 0.02 OrthoFinder
XM_003063769.1 MicpuC2_53494, 53494 OB-fold nucleic acid binding domain, AA-tRNA... 0.08 OrthoFinder
lcl|BLLF01000394.1_cds_GFH11345.1_5822 HaLaN_06828, GFH11345 Lysyl-tRNA synthetase 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20466.1_5481 PRW20466 Lysine-tRNA ligase isoform X2 isoform A 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491345.1_2346 KAA8491345 Lysine--tRNA ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 123 202
IPR004364 Aa-tRNA-synt_II 217 566
No external refs found!