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  5. XM_002502295.1

XM_002502295.1 (MICPUN_108353, 108353)


Aliases : MICPUN_108353, 108353

Description : U box domain; Ubiquitin conjugation factor E4, core [Interproscan].


Gene families : OG_01_0001482 (OrthoFinder) Phylogenetic Tree(s): OG0001482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002502295.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.105 tig00000076_g2403.t1 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz02g21330.t1 No alias U box domain; Ubiquitin conjugation factor E4, core... 0.02 OrthoFinder
EOD22834 No alias Ubiquitin conjugation factor E4, core; U box domain... 0.02 OrthoFinder
PTI_08G03170.1 No alias Ubiquitin conjugation factor E4, core; U box domain... 0.05 OrthoFinder
Sro1843_g301160.1 Contig4701.g34964 Conjugation factor E4 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496984.1_713 KAA8496984 Putative ubiquitin conjugation factor E4 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR019474 Ub_conjug_fac_E4_core 1 120
IPR003613 Ubox_domain 137 207
No external refs found!