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  5. lcl|BLLF01001425.1_cds_GFH19214.1_13691

lcl|BLLF01001425.1_cds_GFH19214.1_13691 (HaLaN_16126, GFH19214)


Aliases : HaLaN_16126, GFH19214

Description : Signal transduction histidine kinase, dimerisation/phosphoacceptor domain [Interproscan].


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001425.1_cds_GFH19214.1_13691
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000640.11 tig00000640_g2766.t1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cpa|evm.model.tig00020610.13 tig00020610_g11951.t1 Histidine kinase 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020710.84 tig00020710_g13337.t1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cpa|evm.model.tig00020965.42 tig00021501_g21945.t1 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre11.g469400 30775874 No description available 0.03 OrthoFinder
Cre16.g678900 30778058 No description available 0.04 OrthoFinder
PTI_18G01300.1 No alias Histidine kinase/HSP90-like ATPase [Interproscan]. 0.01 OrthoFinder
Sro14_g010640.1 Contig1128.g10813 Respiration control sensor protein ArcB 0.01 OrthoFinder
Sro2226_g319830.1 Contig2376.g19526 Osmosensing histidine protein kinase SLN1 0.01 OrthoFinder
Sro287_g108630.1 Contig252.g3104 Sensor protein kinase WalK (Fragment) 0.02 OrthoFinder
Sro369_g128120.1 Contig1690.g15135 Hybrid signal transduction histidine kinase J 0.01 OrthoFinder
Sro431_g141430.1 Contig2042.g17546 Histidine kinase 0.01 OrthoFinder
Sro728_g193740.1 Contig1495.g13658 Hybrid signal transduction histidine kinase 0.02 OrthoFinder
SymbC1.scaffold18394.1 18394.1 PAS fold; Signal transduction histidine kinase,... 0.02 OrthoFinder
Transcript_contig_67477 67477 Histidine kinase/HSP90-like ATPase; PAS domain; SBP... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006544 glycine metabolic process IEP Enrichment
BP GO:0006546 glycine catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009071 serine family amino acid catabolic process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 73 138
No external refs found!