Aliases : tig00021348_g20541.t1
Description : DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana
Gene families : OG_01_0002242 (OrthoFinder) Phylogenetic Tree(s): OG0002242_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cpa|evm.model.tig00021348.38 | |
Cluster | HCCA: Cluster_45 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre07.g322176 | 30775305 | DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana | 0.17 | OrthoFinder | |
Cz01g18090.t1 | No alias | RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... | 0.07 | OrthoFinder | |
Dusal.0023s00046.1 | 33198010 | DNA-directed RNA polymerase, subunit 2, hybrid-binding... | 0.03 | OrthoFinder | |
EOD11590 | No alias | DNA-directed RNA polymerase I subunit RPA2, domain 4;... | 0.03 | OrthoFinder | |
OT_02G02050.1 | No alias | RNA polymerase Rpb2, domain 7; DNA-directed RNA... | 0.04 | OrthoFinder | |
Sro1898_g304130.1 | Contig1148.g10962 | Polymerase I subunit RPA2 | 0.09 | OrthoFinder | |
TP12G01380.1 | No alias | RNA polymerase Rpb2, domain 7; RNA polymerase, beta... | 0.05 | OrthoFinder | |
Transcript_contig_57824 | 57824 | RNA polymerase Rpb2, domain 7; DNA-directed RNA... | 0.07 | OrthoFinder | |
Vocar.0003s0230.1 | 32889165 | RNA polymerase Rpb2, domain 2; DNA-directed RNA... | 0.04 | OrthoFinder | |
XM_002507111.1 | MICPUN_107316, 107316 | Hypothetical protein (ACR2) | 0.04 | OrthoFinder | |
lcl|BLLF01001006.1_cds_GFH16503.1_10980 | HaLaN_12931, GFH16503 | DNA-directed RNA polymerase subunit beta | 0.04 | OrthoFinder | |
lcl|BLLF01001006.1_cds_GFH16505.1_10982 | HaLaN_12933, GFH16505 | DNA-directed RNA polymerase subunit beta | 0.02 | OrthoFinder | |
lcl|BLLF01001679.1_cds_GFH20688.1_15165 | HaLaN_17850, GFH20688 | DNA-directed RNA polymerase subunit beta | 0.03 | OrthoFinder | |
lcl|LHPG02000005.1_cds_PRW58691.1_8067 | PRW58691 | DNA-directed RNA polymerase I subunit | 0.08 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003883 | CTP synthase activity | IEP | Enrichment |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016597 | amino acid binding | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
CC | GO:0030684 | preribosome | IEP | Enrichment |
CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0043177 | organic acid binding | IEP | Enrichment |
BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
No external refs found! |