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  5. Cpa|evm.model.tig00021348.38

Cpa|evm.model.tig00021348.38 (tig00021348_g20541.t1)


Aliases : tig00021348_g20541.t1

Description : DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana


Gene families : OG_01_0002242 (OrthoFinder) Phylogenetic Tree(s): OG0002242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021348.38
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre07.g322176 30775305 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana 0.17 OrthoFinder
Cz01g18090.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.07 OrthoFinder
Dusal.0023s00046.1 33198010 DNA-directed RNA polymerase, subunit 2, hybrid-binding... 0.03 OrthoFinder
EOD11590 No alias DNA-directed RNA polymerase I subunit RPA2, domain 4;... 0.03 OrthoFinder
OT_02G02050.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.04 OrthoFinder
Sro1898_g304130.1 Contig1148.g10962 Polymerase I subunit RPA2 0.09 OrthoFinder
TP12G01380.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase, beta... 0.05 OrthoFinder
Transcript_contig_57824 57824 RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.07 OrthoFinder
Vocar.0003s0230.1 32889165 RNA polymerase Rpb2, domain 2; DNA-directed RNA... 0.04 OrthoFinder
XM_002507111.1 MICPUN_107316, 107316 Hypothetical protein (ACR2) 0.04 OrthoFinder
lcl|BLLF01001006.1_cds_GFH16503.1_10980 HaLaN_12931, GFH16503 DNA-directed RNA polymerase subunit beta 0.04 OrthoFinder
lcl|BLLF01001006.1_cds_GFH16505.1_10982 HaLaN_12933, GFH16505 DNA-directed RNA polymerase subunit beta 0.02 OrthoFinder
lcl|BLLF01001679.1_cds_GFH20688.1_15165 HaLaN_17850, GFH20688 DNA-directed RNA polymerase subunit beta 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58691.1_8067 PRW58691 DNA-directed RNA polymerase I subunit 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 433 497
IPR007644 RNA_pol_bsu_protrusion 36 381
IPR007120 DNA-dir_RNAP_su2_dom 893 961
IPR007120 DNA-dir_RNAP_su2_dom 663 778
IPR007642 RNA_pol_Rpb2_2 176 350
No external refs found!