EOD33714

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].

Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD33714
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000718.1	tig00000718_g3679.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cpa\|evm.model.tig00000718.2	tig00000718_g3679.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00000718.3	tig00000718_g3679.t1	ABC transporter C family member 6 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00000769.1	tig00000769_g3997.t1	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cpa\|evm.model.tig00001024.2	tig00001729_g9740.t1	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00001729.6	tig00001729_g9740.t1	Solute transport.primary active transport.ABC...	0.04	OrthoFinder
Cpa\|evm.model.tig00020553.190	tig00020553_g10680.t1	ABC transporter C family member 4 OS=Arabidopsis thaliana	0.05	OrthoFinder
Cpa\|evm.model.tig00020553.191	tig00020553_g10681.t1	ABC transporter C family member 11 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00020554.164	tig00020554_g10943.t1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Cpa\|evm.model.tig00020592.4	tig00020592_g11633.t1	ABC transporter C family member 1 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cpa\|evm.model.tig00020723.5	tig00020723_g13424.t1	ABC transporter C family member 13 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre04.g228650	30791460	Solute transport.primary active transport.ABC...	0.01	OrthoFinder
Cre07.g325761	30775279	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre13.g564900	30784450, MRP3	Solute transport.primary active transport.ABC...	0.04	OrthoFinder
Cre17.g734612	30781956, MRP2	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cz01g21260.t1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
Cz05g17060.t1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.05	OrthoFinder
Dusal.0852s00003.1	33185426	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
PTI_03G04630.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.03	OrthoFinder
PTI_03G06590.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
Sro1322_g262550.1	Contig3764.g28905	Multiple drug resistance-associated protein-like transporter 1	0.04	OrthoFinder
Sro1659_g289200.1	Contig194.g2262	Oligomycin resistance ATP-dependent permease YOR1	0.02	OrthoFinder
Sro1659_g289240.1	Contig194.g2266	Oligomycin resistance ATP-dependent permease YOR1	0.02	OrthoFinder
Sro183_g079600.1	Contig3056.g24305	Multiple drug resistance-associated protein-like transporter 1	0.03	OrthoFinder
Sro200_g084620.1	Contig201.g2353	Oligomycin resistance ATP-dependent permease YOR1	0.03	OrthoFinder
Sro399_g134960.1	Contig279.g3623	Multiple drug resistance-associated protein-like transporter 1	0.05	OrthoFinder
Sro61_g035030.1	Contig3112.g24756	Multiple drug resistance-associated protein-like transporter 1	0.03	OrthoFinder
SymbC1.scaffold6437.4	6437.4	ABC transporter type 1, transmembrane domain [Interproscan].	0.02	OrthoFinder
Vocar.0028s0030.1	32895600	ABC transporter-like; ABC transporter type 1,...	0.03	OrthoFinder
XM_002508173.1	MICPUN_94915, 94915	ATP-binding cassette superfamily	0.05	OrthoFinder
XM_003055793.1	MicpuC2_55005, 55005	ATP-binding cassette superfamily	0.03	OrthoFinder
lcl\|BLLF01000553.1_cds_GFH12907.1_7384	HaLaN_08686, GFH12907	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
lcl\|BLLF01002022.1_cds_GFH22355.1_16832	HaLaN_19808, GFH22355	ABC transporter type 1, transmembrane domain [Interproscan].	0.01	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491694.1_5162	KAA8491694	Multidrug resistance-associated protein 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0006631	fatty acid metabolic process	IEP	Enrichment
BP	GO:0006633	fatty acid biosynthetic process	IEP	Enrichment
BP	GO:0006720	isoprenoid metabolic process	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Enrichment
BP	GO:0008610	lipid biosynthetic process	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
MF	GO:0015297	antiporter activity	IEP	Enrichment
BP	GO:0016053	organic acid biosynthetic process	IEP	Enrichment
MF	GO:0016421	CoA carboxylase activity	IEP	Enrichment
MF	GO:0016851	magnesium chelatase activity	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Enrichment
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Enrichment
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Enrichment
BP	GO:0044255	cellular lipid metabolic process	IEP	Enrichment
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Enrichment
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Enrichment
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	967	1189
IPR011527	ABC1_TM_dom	156	363
IPR003439	ABC_transporter-like_ATP-bd	1290	1458
IPR003439	ABC_transporter-like_ATP-bd	635	768

External Links

No external refs found!

EOD33714

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation