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  5. Cpa|evm.model.tig00021108.9

Cpa|evm.model.tig00021108.9 (tig00021108_g18299.t1)


Aliases : tig00021108_g18299.t1

No description available


Gene families : OG_01_0003983 (OrthoFinder) Phylogenetic Tree(s): OG0003983_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021108.9
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre01.g012350 30788907 No description available 0.12 OrthoFinder
Cz09g27060.t1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.1 OrthoFinder
Dusal.0002s00021.1 33187998 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.02 OrthoFinder
EOD16648 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.07 OrthoFinder
EOD22070 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
OT_04G04090.1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.07 OrthoFinder
Transcript_contig_78668 78668 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
Transcript_contig_78913 78913 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
Transcript_contig_89760 89760 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
Vocar.0002s0005.1 32890814 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
XM_002506074.1 MICPUN_104038, 104038 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.1 OrthoFinder
XM_003056723.1 MicpuC2_56167, 56167 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01001343.1_cds_GFH18714.1_13191 HaLaN_15562, GFH18714 Expressed protein 0.07 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61325.1_498 PRW61325 DNA polymerase V 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007015 DNA_pol_V/MYBBP1A 687 812
IPR007015 DNA_pol_V/MYBBP1A 75 262
IPR007015 DNA_pol_V/MYBBP1A 272 387
No external refs found!