EOD11443

Description : Zinc finger, CCCH-type, TRM13; Methyltransferase TRM13; TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain [Interproscan].

Gene families : OG_01_0002839 (OrthoFinder) Phylogenetic Tree(s): OG0002839_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD11443
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method	Actions
lcl\|LHPG02000019.1_cds_PRW32644.1_3942	PRW32644	TRNA:m(4)X modification enzyme TRM13-like protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Enrichment
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Enrichment
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006665	sphingolipid metabolic process	IEP	Enrichment
BP	GO:0006672	ceramide metabolic process	IEP	Enrichment
BP	GO:0006694	steroid biosynthetic process	IEP	Enrichment
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
BP	GO:0008202	steroid metabolic process	IEP	Enrichment
MF	GO:0008484	sulfuric ester hydrolase activity	IEP	Enrichment
MF	GO:0016229	steroid dehydrogenase activity	IEP	Enrichment
BP	GO:0016311	dephosphorylation	IEP	Enrichment
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Enrichment
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment
MF	GO:0016791	phosphatase activity	IEP	Enrichment
BP	GO:0030488	tRNA methylation	IEP	Enrichment
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Enrichment
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
CC	GO:0034708	methyltransferase complex	IEP	Enrichment
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
CC	GO:0043527	tRNA methyltransferase complex	IEP	Enrichment
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR021721	Znf_CCCH-type_TRM13	12	38
IPR022776	TRM13/UPF0224_CHHC_Znf_dom	48	72
IPR007871	Methyltransferase_TRM13	188	275

External Links

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EOD11443

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation