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  5. Dusal.0888s00004.1

Dusal.0888s00004.1 (33188562)


Aliases : 33188562

Description : ABC transporter-like; ABC transporter type 1, transmembrane domain [Interproscan].


Gene families : OG_01_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0888s00004.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cz06g05060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
Cz14g25100.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_67533 67533 ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1041.1 32885959 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0014s0091.1 32888484 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
XM_002502312.1 MICPUN_58287, 58287 ATP-binding cassette superfamily 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
MF GO:0005544 calcium-dependent phospholipid binding IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 17 222
IPR003439 ABC_transporter-like_ATP-bd 286 435
No external refs found!