Dusal.0866s00003.1 (33187687)

Aliases : 33187687

Description : RNA polymerase II associated factor Paf1 [Interproscan].

Gene families : OG_01_0005399 (OrthoFinder) Phylogenetic Tree(s): OG0005399_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dusal.0866s00003.1
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method	Actions
EOD07164	No alias	RNA polymerase II associated factor Paf1 [Interproscan].	0.01	OrthoFinder
OT_01G04890.1	No alias	RNA polymerase II associated factor Paf1 [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	None	Extended
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
CC	GO:0016593	Cdc73/Paf1 complex	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Enrichment
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Enrichment
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Enrichment
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Enrichment
MF	GO:0004359	glutaminase activity	IEP	Enrichment
MF	GO:0004521	endoribonuclease activity	IEP	Enrichment
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Enrichment
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Enrichment
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Enrichment
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Enrichment
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Enrichment
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006839	mitochondrial transport	IEP	Enrichment
BP	GO:0006862	nucleotide transport	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006906	vesicle fusion	IEP	Enrichment
BP	GO:0007030	Golgi organization	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
CC	GO:0008303	caspase complex	IEP	Enrichment
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Enrichment
CC	GO:0009512	cytochrome b6f complex	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Enrichment
MF	GO:0015301	anion:anion antiporter activity	IEP	Enrichment
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Enrichment
BP	GO:0015748	organophosphate ester transport	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
BP	GO:0016050	vesicle organization	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016746	acyltransferase activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Enrichment
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
CC	GO:0017119	Golgi transport complex	IEP	Enrichment
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0036260	RNA capping	IEP	Enrichment
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Enrichment
BP	GO:0042816	vitamin B6 metabolic process	IEP	Enrichment
BP	GO:0042819	vitamin B6 biosynthetic process	IEP	Enrichment
BP	GO:0042822	pyridoxal phosphate metabolic process	IEP	Enrichment
BP	GO:0042823	pyridoxal phosphate biosynthetic process	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046184	aldehyde biosynthetic process	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048280	vesicle fusion with Golgi apparatus	IEP	Enrichment
BP	GO:0048284	organelle fusion	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0061024	membrane organization	IEP	Enrichment
BP	GO:0061025	membrane fusion	IEP	Enrichment
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Enrichment
MF	GO:0070001	aspartic-type peptidase activity	IEP	Enrichment
CC	GO:0070069	cytochrome complex	IEP	Enrichment
BP	GO:0070585	protein localization to mitochondrion	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0071806	protein transmembrane transport	IEP	Enrichment
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Enrichment
BP	GO:0090174	organelle membrane fusion	IEP	Enrichment
CC	GO:0098588	bounding membrane of organelle	IEP	Enrichment
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Enrichment
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
MF	GO:0140323	solute:anion antiporter activity	IEP	Enrichment
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Enrichment
CC	GO:1905368	peptidase complex	IEP	Enrichment
CC	GO:1905369	endopeptidase complex	IEP	Enrichment
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007133	RNA_pol_II-assoc_Paf1	66	151
IPR007133	RNA_pol_II-assoc_Paf1	152	395

External Links

No external refs found!

Dusal.0866s00003.1 (33187687)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation