1. Home
  2. Species
  3. Dunaliella sp.
  4. Sequence
  5. Dusal.0157s00013.1

Dusal.0157s00013.1 (33200051)


Aliases : 33200051

Description : RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4 [Interproscan].


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0157s00013.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.6 tig00022075_g23568.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre16.g680900 30777306, RPB1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder
Cz01g33020.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.02 OrthoFinder
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.04 OrthoFinder
EOD21342 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.03 OrthoFinder
PTI_12G01840.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.01 OrthoFinder
Vocar.0005s0135.1 32883912 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_002503483.1 MICPUN_94662, 94662 RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,... 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57000.1_9043 PRW57000 DNA-directed RNA polymerase II subunit 1 0.05 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490883.1_5655 KAA8490883 DNA-directed RNA polymerase II subunit 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Enrichment
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019905 syntaxin binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 67 164
IPR007081 RNA_pol_Rpb1_5 161 460
No external refs found!