1. Home
  2. Species
  3. Dunaliella sp.
  4. Sequence
  5. Dusal.0157s00011.1

Dusal.0157s00011.1 (33200035)


Aliases : 33200035

Description : RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3 [Interproscan].


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0157s00011.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.15 tig00000241_g20874.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder
Cpa|evm.model.tig00022075.5 tig00022075_g23567.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00022075.6 tig00022075_g23568.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre03.g165750 30786879 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder
Cre16.g680900 30777306, RPB1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder
Cz01g33020.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.03 OrthoFinder
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.05 OrthoFinder
EOD16843 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.03 OrthoFinder
EOD21342 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.01 OrthoFinder
OT_10G01340.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.04 OrthoFinder
PTI_12G01840.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
Sro544_g163690.1 Contig3214.g25423 DNA-directed RNA polymerase subunit beta' (Fragment) 0.02 OrthoFinder
SymbC1.scaffold1105.2 1105.2 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
TP06G07080.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.03 OrthoFinder
lcl|BLLF01001189.1_cds_GFH17710.1_12187 HaLaN_14398, GFH17710 DNA-directed RNA polymerase subunit 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58100.1_7994 PRW58100 DNA-directed RNA polymerase III largest subunit 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57000.1_9043 PRW57000 DNA-directed RNA polymerase II subunit 1 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492229.1_5412 KAA8492229 DNA-directed RNA polymerase III subunit RPC1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 383 506
IPR007080 RNA_pol_Rpb1_1 51 212
IPR000722 RNA_pol_asu 214 378
No external refs found!