Dusal.0073s00015.1 (33194603)

Aliases : 33194603

Description : RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3 [Interproscan].

Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dusal.0073s00015.1
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g529600	30792110	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder
Cz05g31150.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.03	OrthoFinder
EOD22189	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
OT_14G01020.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
PTI_00G04260.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.04	OrthoFinder
TP06G00570.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.03	OrthoFinder
Vocar.0037s0083.1	32897652	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_003063796.1	MicpuC2_36623, 36623	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.03	OrthoFinder
lcl\|BLLF01001934.1_cds_GFH21937.1_16414	HaLaN_19326, GFH21937	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|BLLF01001934.1_cds_GFH21938.1_16415	HaLaN_19327, GFH21938	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|BLLF01002728.1_cds_GFH25131.1_19608	HaLaN_23045, GFH25131	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW58030.1_8585	PRW58030	DNA-directed RNA polymerase I complex large subunit Nuc1...	0.03	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW58031.1_8584	PRW58031	DNA-directed RNA polymerase I complex large subunit Nuc1...	0.02	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8493983.1_3847	KAA8493983	DNA-directed RNA polymerase I subunit rpa1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Enrichment
MF	GO:0004366	glycerol-3-phosphate O-acyltransferase activity	IEP	Enrichment
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Enrichment
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
MF	GO:0008374	O-acyltransferase activity	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
CC	GO:0017119	Golgi transport complex	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	589	787
IPR007080	RNA_pol_Rpb1_1	12	223
IPR007066	RNA_pol_Rpb1_3	794	944

External Links

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Dusal.0073s00015.1 (33194603)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation