Dusal.0003s00026.1 (33187489)

Aliases : 33187489

Description : Ribosomal protein S13 [Interproscan].

Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dusal.0003s00026.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g272950	30778811, RPS18	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	OrthoFinder
Cz03g21050.t1	No alias	Ribosomal protein S13 [Interproscan].	0.05	OrthoFinder
EOD07550	No alias	Ribosomal protein S13 [Interproscan].	0.07	OrthoFinder
EOD24485	No alias	Ribosomal protein S13 [Interproscan].	0.07	OrthoFinder
OT_14G03080.1	No alias	Ribosomal protein S13 [Interproscan].	0.06	OrthoFinder
PTI_23G01020.1	No alias	Ribosomal protein S13 [Interproscan].	0.12	OrthoFinder
Sro2117_g315240.1	Contig3258.g25694	40S ribosomal protein S18	0.16	OrthoFinder
SymbC1.scaffold6247.1	6247.1	Ribosomal protein S13 [Interproscan].	0.01	OrthoFinder
TP02G00280.1	No alias	Ribosomal protein S13 [Interproscan].	0.15	OrthoFinder
Vocar.0002s0337.1	32891179	Ribosomal protein S13 [Interproscan].	0.08	OrthoFinder
XM_002505702.1	MICPUN_109369, 109369	Ribosomal protein S18 (RPS18)	0.13	OrthoFinder
XM_003063744.1	MicpuC2_49747, 49747	Ribosomal protein S18 (RPS18)	0.06	OrthoFinder
lcl\|BLLF01000380.1_cds_GFH11172.1_5649	HaLaN_06628, GFH11172	Ribosomal protein S13 [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56629.1_9755	PRW56629	40S ribosomal S18	0.1	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495014.1_3544	KAA8495014	40S ribosomal protein S18	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
BP	GO:0009889	regulation of biosynthetic process	IEP	Enrichment
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016832	aldehyde-lyase activity	IEP	Enrichment
CC	GO:0017119	Golgi transport complex	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Enrichment
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
MF	GO:0042393	histone binding	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Enrichment
BP	GO:0051252	regulation of RNA metabolic process	IEP	Enrichment
CC	GO:0097525	spliceosomal snRNP complex	IEP	Enrichment
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
CC	GO:0120114	Sm-like protein family complex	IEP	Enrichment
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	15	142

External Links

No external refs found!

Dusal.0003s00026.1 (33187489)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation