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  5. SymbC1.scaffold70.74

SymbC1.scaffold70.74 (70.74)


Aliases : 70.74

Description : Bacterial sugar transferase; O-antigen ligase-related [Interproscan].


Gene families : OG_01_0004649 (OrthoFinder) Phylogenetic Tree(s): OG0004649_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold70.74
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold20.254 20.254 UDP-glucose/GDP-mannose dehydrogenase, dimerisation;... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004061 arylformamidase activity IEP Enrichment
MF GO:0004371 glycerone kinase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006071 glycerol metabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006569 tryptophan catabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009074 aromatic amino acid family catabolic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009310 amine catabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015099 nickel cation transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0015675 nickel cation transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0019400 alditol metabolic process IEP Enrichment
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Enrichment
BP GO:0019627 urea metabolic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0035444 nickel cation transmembrane transport IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042402 cellular biogenic amine catabolic process IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
BP GO:0042436 indole-containing compound catabolic process IEP Enrichment
BP GO:0042537 benzene-containing compound metabolic process IEP Enrichment
BP GO:0042618 poly-hydroxybutyrate metabolic process IEP Enrichment
BP GO:0042619 poly-hydroxybutyrate biosynthetic process IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046218 indolalkylamine catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0051304 chromosome separation IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0070189 kynurenine metabolic process IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0071941 nitrogen cycle metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901440 poly(hydroxyalkanoate) metabolic process IEP Enrichment
BP GO:1901441 poly(hydroxyalkanoate) biosynthetic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR003362 Bact_transf 275 401
IPR007016 O-antigen_ligase-related 626 778
No external refs found!